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POPTR_0004s13670.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s13670.1" - Cytochrome P450 family protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s13670.1Cytochrome P450 family protein; Belongs to the cytochrome P450 family (510 aa)    
Predicted Functional Partners:
POPTR_0008s08440.2
Diminuto family protein (563 aa)
     
 
  0.923
POPTR_0010s17710.1
Diminuto family protein (563 aa)
         
  0.923
POPTR_0010s13400.1
Zinc finger family protein (285 aa)
           
  0.667
POPTR_0008s12020.1
Uncharacterized protein (165 aa)
           
  0.667
POPTR_0008s12010.1
annotation not available (127 aa)
           
  0.667
POPTR_0005s26710.1
Methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6/SMT family (364 aa)
       
 
  0.648
POPTR_0002s01780.1
Methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Erg6/SMT family (364 aa)
       
 
  0.648
POPTR_0007s01710.1
Reticulon-like protein; 3-beta hydroxysteroid dehydrogenase/isomerase family protein (580 aa)
       
 
  0.644
POPTR_0003s15880.1
3-beta-hydroxysteroid-delta(8) family protein (220 aa)
           
  0.630
POPTR_0001s12720.1
annotation not available (166 aa)
           
  0.630
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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