STRINGSTRING
POPTR_0004s15400.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s15400.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s15400.1Predicted protein (381 aa)    
Predicted Functional Partners:
POPTR_0003s07930.1
Putative uncharacterized protein VEF904 [source-UniProtKB/TrEMBL;Acc-B9GYN4_POPTR] (433 aa)
           
  0.660
POPTR_0015s12160.1
Predicted protein (688 aa)
           
  0.573
POPTR_0003s11960.1
MIKC mads-box transcription factor [source-UniProtKB/TrEMBL;Acc-B9GW46_POPTR] (131 aa)
     
   
  0.538
POPTR_0019s06120.1
Hypothetical protein (389 aa)
     
   
  0.507
POPTR_0018s09890.1
Predicted protein (598 aa)
           
  0.495
POPTR_0006s18340.1
Predicted protein (696 aa)
           
  0.495
POPTR_0010s23390.1
Putative uncharacterized protein HDMA902 [source-UniProtKB/TrEMBL;Acc-B9HUJ4_POPTR] (862 aa)
           
  0.493
POPTR_0008s03510.1
Putative uncharacterized protein HDMA901 [source-UniProtKB/TrEMBL;Acc-B9HLH0_POPTR] (811 aa)
           
  0.493
POPTR_0007s14310.1
Predicted protein (182 aa)
     
   
  0.473
POPTR_0028s00450.1
Predicted protein (652 aa)
     
   
  0.452
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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