STRINGSTRING
POPTR_0004s16130.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s16130.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s16130.1Predicted protein (466 aa)    
Predicted Functional Partners:
POPTR_0014s16120.1
Predicted protein (679 aa)
     
 
  0.906
POPTR_0011s08690.1
Fimbrin-like family protein (608 aa)
     
 
  0.906
POPTR_0002s25290.1
Predicted protein (660 aa)
     
 
  0.906
POPTR_0001s37110.1
Predicted protein (691 aa)
     
 
  0.906
POPTR_0013s01770.1
Predicted protein; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments (303 aa)
     
      0.896
POPTR_0005s02540.1
Predicted protein; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments (303 aa)
     
      0.896
POPTR_0002s05330.1
Predicted protein (286 aa)
       
      0.890
POPTR_0001s34130.1
Predicted protein (273 aa)
       
      0.890
POPTR_0474s00200.1
Actin depolymerizing factor 1 [source-UniProtKB/TrEMBL;Acc-A9P876_POPTR] (139 aa)
     
 
  0.872
POPTR_0015s13080.1
Actin depolymerizing factor 8 [source-UniProtKB/TrEMBL;Acc-B9ID88_POPTR] (137 aa)
     
 
  0.872
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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