STRINGSTRING
POPTR_0004s16300.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s16300.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s16300.1Predicted protein (303 aa)    
Predicted Functional Partners:
POPTR_0010s14560.1
Predicted protein (1686 aa)
   
 
  0.887
POPTR_0015s11500.1
Predicted protein (489 aa)
     
  0.673
POPTR_0015s05020.1
Predicted protein (485 aa)
     
  0.673
POPTR_0012s10630.1
Predicted protein (489 aa)
     
  0.673
POPTR_0012s04080.1
Predicted protein (485 aa)
     
  0.673
POPTR_0001s00880.1
Predicted protein (475 aa)
     
  0.673
POPTR_0015s03920.1
Uncharacterized protein (152 aa)
   
 
  0.618
POPTR_0012s05040.1
Predicted protein; Catalyzes the epimerization of various hydrophobic and polar dipeptides. Has epimerase activity with L-Ala-L-Ala, L-Ala- L-Ser, L-Ala-L-Thr and L-Ala-L-Trp (in vitro) (421 aa)
   
 
  0.618
POPTR_0012s07180.1
Isochorismate synthase [source-UniProtKB/TrEMBL;Acc-B9I302_POPTR] (572 aa)
       
  0.614
POPTR_0008s17800.1
Urease (837 aa)
           
  0.570
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (19%) [HD]