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STRINGSTRING
POPTR_0004s16380.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s16380.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s16380.1Uncharacterized protein (587 aa)    
Predicted Functional Partners:
POPTR_0001s39640.1
annotation not available (185 aa)
   
   
 
0.670
PPO6
Uncharacterized protein; Polyphenol oxidase [source-UniProtKB/TrEMBL;Acc-B9P534_POPTR] (432 aa)
   
   
 
0.665
PPO4
Uncharacterized protein; Polyphenol oxidase [source-UniProtKB/TrEMBL;Acc-B9N8W1_POPTR] (581 aa)
   
   
 
0.665
PPO2
Uncharacterized protein; Polyphenol oxidase [source-UniProtKB/TrEMBL;Acc-B9N8W3_POPTR] (581 aa)
   
   
 
0.665
PPO5
Uncharacterized protein; Polyphenol oxidase [source-UniProtKB/TrEMBL;Acc-B9N954_POPTR] (581 aa)
   
   
 
0.665
POPTR_0001s39900.1
annotation not available (376 aa)
   
   
 
0.665
POPTR_0001s39940.1
annotation not available (575 aa)
   
   
 
0.665
PPO3
Uncharacterized protein; Polyphenol oxidase [source-UniProtKB/TrEMBL;Acc-B9HYL4_POPTR] (590 aa)
   
   
 
0.664
PPO11
Polyphenol oxidase (573 aa)
   
   
 
0.664
POPTR_0001s39650.1
annotation not available (543 aa)
   
   
 
0.664
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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