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POPTR_0004s16640.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s16640.1" - Hypothetical protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s16640.1Hypothetical protein (912 aa)    
Predicted Functional Partners:
POPTR_0017s11460.1
High mobility group family [source-UniProtKB/TrEMBL;Acc-B9IJT6_POPTR] (610 aa)
     
  0.952
POPTR_0004s12290.1
High mobility group family [source-UniProtKB/TrEMBL;Acc-B9H0D7_POPTR] (644 aa)
     
  0.952
POPTR_0018s06880.1
Uncharacterized protein (247 aa)
   
 
  0.939
POPTR_0018s06870.1
Annotation not available (174 aa)
   
 
  0.939
POPTR_0016s05810.1
Predicted protein (451 aa)
   
 
  0.939
POPTR_0006s15110.1
Annotation not available (171 aa)
   
 
  0.939
POPTR_0006s15100.1
Predicted protein (247 aa)
   
 
  0.939
POPTR_0006s13750.1
Predicted protein (348 aa)
   
 
  0.939
POPTR_0006s04660.1
Uncharacterized protein (381 aa)
   
 
  0.939
POPTR_0001s42990.1
Predicted protein (427 aa)
   
 
  0.939
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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