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POPTR_0004s18050.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s18050.1" - Plant synaptotagmin [source:UniProtKB/TrEMBL in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s18050.1Plant synaptotagmin [source-UniProtKB/TrEMBL;Acc-B9H193_POPTR] (558 aa)    
Predicted Functional Partners:
POPTR_0002s06950.1
Predicted protein (1101 aa)
     
      0.597
POPTR_0002s15190.1
Integral membrane single C2 domain protein [source-UniProtKB/TrEMBL;Acc-B9GPS3_POPTR] (500 aa)
     
 
0.583
POPTR_0010s23080.1
Predicted protein (544 aa)
         
0.573
POPTR_0014s06870.1
Integral membrane single C2 domain protein [source-UniProtKB/TrEMBL;Acc-B9IC33_POPTR] (500 aa)
     
 
0.573
POPTR_0008s03820.1
Predicted protein (547 aa)
         
0.573
POPTR_0001s39020.1
Predicted protein (610 aa)
     
  0.550
POPTR_0011s10390.1
Predicted protein (596 aa)
     
  0.543
POPTR_0012s04590.1
Predicted protein (592 aa)
     
  0.537
POPTR_0005s21370.1
Exocyst complex component Sec5 family protein (1103 aa)
     
      0.536
POPTR_0005s22350.1
Predicted protein (590 aa)
     
  0.533
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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