STRINGSTRING
POPTR_0004s18400.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s18400.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s18400.1Predicted protein (488 aa)    
Predicted Functional Partners:
POPTR_0001s33930.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGR2_POPTR] (260 aa)
 
  0.997
POPTR_0005s23910.1
Predicted protein; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells (130 aa)
   
  0.994
POPTR_0010s26000.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PET4_POPTR] (623 aa)
 
0.994
POPTR_0008s00560.1
Predicted protein (623 aa)
 
0.994
POPTR_0019s07220.1
Predicted protein (447 aa)
     
  0.993
POPTR_0013s07630.1
Hypothetical protein (397 aa)
     
  0.993
POPTR_0019s04470.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI22_POPTR] (219 aa)
   
  0.992
POPTR_0016s14660.1
Predicted protein (230 aa)
   
  0.992
POPTR_0013s04830.1
Predicted protein (229 aa)
   
  0.992
POPTR_0017s11540.1
Annotation not available (184 aa)
   
  0.991
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (7%) [HD]