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STRINGSTRING
POPTR_0004s18410.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s18410.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s18410.1Uncharacterized protein (486 aa)    
Predicted Functional Partners:
POPTR_0007s15290.1
Prolyl oligopeptidase family protein (754 aa)
           
  0.728
POPTR_0002s11430.1
Uncharacterized protein (388 aa)
           
  0.690
POPTR_0010s17200.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PD30_POPTR] (508 aa)
           
  0.676
POPTR_0008s09010.1
Uncharacterized protein (493 aa)
           
  0.676
POPTR_0016s08130.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PDY6_POPTR] (435 aa)
     
   
  0.603
POPTR_0006s23050.1
Uncharacterized protein (429 aa)
     
   
  0.603
POPTR_0001s33310.1
Uncharacterized protein (552 aa)
           
  0.603
POPTR_0012s03360.1
annotation not available (92 aa)
           
  0.601
POPTR_0012s03350.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PH52_POPTR] (262 aa)
           
  0.601
POPTR_0007s07760.1
Uncharacterized protein (411 aa)
           
  0.601
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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