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STRINGSTRING
POPTR_0004s19460.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s19460.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s19460.1Uncharacterized protein (333 aa)    
Predicted Functional Partners:
POPTR_0018s09190.1
Uncharacterized protein (1082 aa)
     
 
  0.900
PGE901
FERTILIZATION-INDEPENDENT ENDOSPERM family protein; Polycomb group protein [source-UniProtKB/TrEMBL;Acc-B9I7G3_POPTR] (371 aa)
       
 
  0.733
POPTR_0002s24730.1
Forkhead-associated domain-containing family protein (316 aa)
     
 
  0.514
CHR910
Putative uncharacterized protein CHR910 [source-UniProtKB/TrEMBL;Acc-B9HM80_POPTR] (3347 aa)
     
 
  0.437
POPTR_0010s02080.1
annotation not available (1123 aa)
       
 
  0.424
POPTR_0009s09600.1
Uncharacterized protein (934 aa)
       
 
  0.413
POPTR_0001s30570.1
Homeobox family protein (930 aa)
       
 
  0.413
POPTR_0002s19670.1
annotation not available (863 aa)
     
 
  0.405
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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