STRINGSTRING
POPTR_0004s20070.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s20070.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s20070.1Predicted protein (136 aa)    
Predicted Functional Partners:
POPTR_0014s09370.1
Predicted protein (467 aa)
           
  0.531
POPTR_0002s17140.1
Predicted protein (408 aa)
           
  0.531
POPTR_0014s14630.1
Annotation not available (180 aa)
           
  0.528
POPTR_0014s14620.1
Predicted protein; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (415 aa)
           
  0.528
POPTR_0010s13260.1
Predicted protein (290 aa)
           
  0.524
POPTR_0008s12160.1
Predicted protein (280 aa)
           
  0.524
POPTR_0003s11650.1
Predicted protein (442 aa)
           
  0.426
POPTR_0001s08130.1
Predicted protein (442 aa)
           
  0.426
POPTR_0001s04380.1
Predicted protein (729 aa)
           
  0.426
POPTR_0014s14640.1
Annotation not available (208 aa)
           
  0.424
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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