STRINGSTRING
POPTR_0004s20320.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s20320.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s20320.1Predicted protein (203 aa)    
Predicted Functional Partners:
POPTR_0005s25300.1
Predicted protein (272 aa)
   
   
  0.600
POPTR_0002s03320.1
Predicted protein (272 aa)
   
     
  0.575
POPTR_0019s13630.1
Predicted protein (306 aa)
           
  0.531
POPTR_0013s02160.1
Predicted protein (339 aa)
   
        0.526
POPTR_0010s17680.1
Predicted protein (233 aa)
   
          0.510
POPTR_0013s15690.1
Predicted protein (221 aa)
   
        0.500
POPTR_0004s15750.1
Predicted protein (517 aa)
   
   
  0.497
POPTR_0005s22090.1
Predicted protein (208 aa)
   
        0.459
POPTR_0005s27140.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PH60_POPTR] (343 aa)
   
        0.444
POPTR_0002s06280.1
Predicted protein (284 aa)
   
        0.441
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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