STRINGSTRING
POPTR_0004s20430.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s20430.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s20430.1Predicted protein (687 aa)    
Predicted Functional Partners:
POPTR_0005s14990.1
Silencing group A protein [source-UniProtKB/TrEMBL;Acc-B9GV99_POPTR] (193 aa)
     
 
  0.957
POPTR_0004s09330.1
Silencing group A protein [source-UniProtKB/TrEMBL;Acc-B9H343_POPTR] (190 aa)
     
 
  0.957
POPTR_0005s24410.1
Predicted protein (444 aa)
       
      0.890
POPTR_0004s06620.1
Hypothetical protein (629 aa)
       
      0.890
POPTR_0002s04120.1
Predicted protein (496 aa)
       
      0.890
POPTR_0004s21500.1
Predicted protein (567 aa)
     
      0.540
POPTR_0018s04830.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002324124.1] (204 aa)
       
 
0.513
POPTR_0006s08020.1
Predicted protein (283 aa)
       
 
0.512
POPTR_0006s25160.1
Predicted protein (293 aa)
       
 
0.512
POPTR_0009s05010.1
Predicted protein (304 aa)
     
   
  0.508
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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