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POPTR_0004s20630.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s20630.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s20630.1Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family (542 aa)    
Predicted Functional Partners:
POPTR_0001s36370.1
Thymidylate kinase family protein (222 aa)
     
 
  0.944
POPTR_0010s12460.1
AICARFT/IMPCHase bienzyme family protein; Aminoimidazolecarboximide ribonucleotide transformylase/inosine monophosphate cyclohydrolase [source-UniProtKB/TrEMBL;Acc-B9HW83_POPTR] (545 aa)
         
  0.925
PURA
Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP (By similarity) (491 aa)
     
 
  0.918
POPTR_0006s09200.2
Uncharacterized protein; Uracil phosphoribosyltransferase (298 aa)
         
  0.907
POPTR_0003s12830.1
Uncharacterized protein (534 aa)
     
 
    0.907
POPTR_0005s22030.1
Uncharacterized protein (164 aa)
         
  0.902
POPTR_0005s10450.1
Uncharacterized protein (134 aa)
         
  0.902
POPTR_0010s20070.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily (549 aa)
     
 
  0.829
POPTR_0008s06410.1
annotation not available (379 aa)
     
 
  0.829
POPTR_0013s05060.1
Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family (260 aa)
       
0.804
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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