STRINGSTRING
POPTR_0004s20800.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s20800.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s20800.1Uncharacterized protein (496 aa)    
Predicted Functional Partners:
POPTR_0019s04610.1
annotation not available (130 aa)
         
  0.966
POPTR_0013s05000.1
Uncharacterized protein; Belongs to the calycin superfamily. Lipocalin family (489 aa)
         
  0.966
POPTR_0007s10980.1
Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin (643 aa)
         
  0.966
POPTR_0005s18160.1
Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin (692 aa)
         
  0.966
POPTR_0001s23620.1
annotation not available (470 aa)
         
  0.908
POPTR_0009s16140.1
Uncharacterized protein (496 aa)
   
   
 
0.801
POPTR_0001s07730.1
Uncharacterized protein (301 aa)
           
  0.761
POPTR_0014s14400.1
Sodium symporter-related family protein (353 aa)
           
  0.741
CYP97C4
Uncharacterized protein; Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9MTJ7_POPTR] (545 aa)
           
  0.741
POPTR_0013s03470.1
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7’ (582 aa)
           
  0.735
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (9%) [HD]