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POPTR_0004s21070.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s21070.1" - CCR4-NOT transcription complex family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s21070.1CCR4-NOT transcription complex family protein (277 aa)    
Predicted Functional Partners:
POPTR_0014s05790.1
Uncharacterized protein (2340 aa)
     
 
  0.848
POPTR_0002s14400.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PA23_POPTR] (2370 aa)
     
 
  0.848
POPTR_0001s00730.1
Uncharacterized protein (51 aa)
     
 
  0.848
POPTR_0016s06170.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002323309.1] (466 aa)
     
 
  0.841
POPTR_0006s21030.1
Endonuclease/exonuclease/phosphatase family protein (549 aa)
     
 
  0.841
POPTR_0003s10520.1
Uncharacterized protein (382 aa)
     
 
  0.841
POPTR_0019s04840.1
annotation not available (770 aa)
       
 
  0.834
POPTR_0019s04830.1
annotation not available (149 aa)
       
 
  0.834
POPTR_0013s05630.2
Uncharacterized protein (886 aa)
       
 
  0.834
POPTR_0017s10470.1
annotation not available (666 aa)
     
 
  0.832
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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