STRINGSTRING
POPTR_0004s21100.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s21100.1" - Transcription factor E2F [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s21100.1Transcription factor E2F [source-UniProtKB/TrEMBL;Acc-B9MYV3_POPTR] (474 aa)    
Predicted Functional Partners:
RBL901
Retinoblastoma-related protein [source-UniProtKB/Swiss-Prot;Acc-RBR_POPTR]; Regulator of biological processes that recruits a histone deacetylase to control gene transcription. May play a role in the entry into mitosis, negatively regulating the cell proliferation. Formation of stable complexes with geminiviridae replication-associated proteins may create a cellular environment which favors viral DNA replication (By similarity) (1035 aa)
     
  0.988
POPTR_0016s09650.1
Annotation not available (89 aa)
     
  0.986
POPTR_0016s09640.1
Hypothetical protein (261 aa)
     
  0.986
POPTR_0006s12620.1
Transcription factor DP, E2 dimerization partner protein [source-UniProtKB/TrEMBL;Acc-B9IFR2_POPTR] (299 aa)
     
  0.986
POPTR_0005s16540.1
Predicted protein (2268 aa)
       
      0.957
POPTR_0002s09330.1
Predicted protein (2276 aa)
       
      0.957
POPTR_0015s10280.1
Predicted protein (324 aa)
     
      0.919
POPTR_0018s01140.1
Predicted protein (499 aa)
     
  0.919
POPTR_0014s02120.1
Predicted protein (363 aa)
     
  0.919
POPTR_0009s09610.1
Uncharacterized protein (221 aa)
     
  0.919
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (9%) [HD]