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POPTR_0004s21160.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s21160.1" - NITRILASE-LIKE protein 1 in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s21160.1NITRILASE-LIKE protein 1 (301 aa)    
Predicted Functional Partners:
POPTR_0015s06560.1
Uncharacterized protein (380 aa)
   
  0.998
POPTR_0015s00210.1
Uncharacterized protein; Belongs to the spermidine/spermine synthase family (361 aa)
       
  0.981
POPTR_0012s01730.1
Uncharacterized protein; Belongs to the spermidine/spermine synthase family (361 aa)
       
  0.981
POPTR_0010s10470.1
Spermidine synthase family protein; Belongs to the spermidine/spermine synthase family (335 aa)
       
  0.977
POPTR_0008s14650.1
Spermidine synthase family protein; Belongs to the spermidine/spermine synthase family (335 aa)
       
  0.977
POPTR_0019s05330.1
annotation not available (311 aa)
       
  0.961
POPTR_0005s26760.1
Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family (416 aa)
       
  0.961
POPTR_0002s01720.1
Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family (381 aa)
       
  0.961
POPTR_0017s01520.1
Uncharacterized protein (513 aa)
       
  0.927
POPTR_0004s07430.1
Amine oxidase family protein (487 aa)
       
  0.927
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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