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POPTR_0004s21180.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s21180.1" - Rac GTPase activating protein 1 in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s21180.1Rac GTPase activating protein 1 (479 aa)    
Predicted Functional Partners:
POPTR_0007s09170.1
Predicted protein (197 aa)
     
  0.660
POPTR_0013s12760.1
Predicted protein (197 aa)
     
  0.648
POPTR_0019s12210.1
Predicted protein (197 aa)
     
  0.620
POPTR_0005s26340.1
Predicted protein (197 aa)
     
  0.620
POPTR_0009s13700.1
Predicted protein (210 aa)
     
  0.617
POPTR_0011s05990.1
Predicted protein (196 aa)
     
  0.617
POPTR_0018s09020.1
Predicted protein (209 aa)
       
  0.607
POPTR_0015s08430.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002322119.1] (134 aa)
       
  0.607
POPTR_0015s08420.1
Annotation not available (111 aa)
       
  0.607
POPTR_0014s05070.1
Predicted protein (204 aa)
       
  0.607
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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