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POPTR_0004s21200.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s21200.1" - Sec23/sec24 transport family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s21200.1Sec23/sec24 transport family protein (744 aa)    
Predicted Functional Partners:
POPTR_0009s06030.1
annotation not available (169 aa)
     
 
  0.981
POPTR_0009s06020.1
annotation not available (974 aa)
     
 
  0.981
POPTR_0001s26820.1
annotation not available (990 aa)
     
 
  0.981
POPTR_0030s00430.1
annotation not available (292 aa)
     
 
  0.976
POPTR_0002s08350.1
annotation not available (394 aa)
     
 
  0.976
POPTR_0014s17660.1
annotation not available (365 aa)
     
 
  0.961
POPTR_0005s05090.1
Transport Sec24 family protein (1080 aa)
     
 
0.957
POPTR_0030s00440.1
annotation not available (795 aa)
     
 
0.957
POPTR_0014s10820.1
annotation not available (847 aa)
     
 
0.946
POPTR_0008s16120.1
Uncharacterized protein (753 aa)
     
 
0.946
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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