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POPTR_0004s21220.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s21220.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s21220.1Uncharacterized protein (102 aa)    
Predicted Functional Partners:
POPTR_0004s19660.1
DNA-directed DNA polymerase epsilon catalytic subunit family protein (2160 aa)
     
  0.994
POPTR_0012s03640.1
DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication (518 aa)
     
  0.992
POPTR_0015s10230.1
Uncharacterized protein (592 aa)
     
 
  0.949
DHFR-TS-2
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (528 aa)
     
   
  0.935
DHFR-TS-1
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (528 aa)
     
   
  0.935
POPTR_0015s06290.1
Repressor family protein (156 aa)
     
 
  0.927
POPTR_0012s05470.1
Repressor family protein (157 aa)
     
 
  0.927
POPTR_0014s11610.1
DNA helicase; Belongs to the MCM family (718 aa)
     
 
  0.918
POPTR_0005s06690.1
DNA polymerase (1088 aa)
     
 
  0.906
POPTR_0007s10880.1
DNA polymerase (1536 aa)
     
 
  0.905
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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