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POPTR_0004s21950.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s21950.1" - Histone deacetylase [source:UniProtKB/TrEMBL in Populus trichocarpa
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s21950.1Histone deacetylase [source-UniProtKB/TrEMBL;Acc-B9MZ37_POPTR] (501 aa)    
Predicted Functional Partners:
POPTR_0007s12130.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9HEL3_POPTR] (1517 aa)
   
  0.986
POPTR_0005s13810.1
SET domain protein [source-UniProtKB/TrEMBL;Acc-B9H699_POPTR] (1428 aa)
   
  0.986
POPTR_0002s22430.1
Nucleosome/chromatin assembly factor group [source-UniProtKB/TrEMBL;Acc-A9PHH9_POPTR] (424 aa)
     
  0.979
POPTR_0018s06840.1
Nucleosome/chromatin assembly factor group [source-UniProtKB/TrEMBL;Acc-B9N5H1_POPTR] (467 aa)
     
  0.978
POPTR_0014s17790.1
Nucleosome/chromatin assembly factor group [source-UniProtKB/TrEMBL;Acc-B9IB49_POPTR] (424 aa)
     
  0.978
POPTR_0009s13750.1
Nucleosome/chromatin assembly factor group [source-UniProtKB/TrEMBL;Acc-B9HR56_POPTR] (418 aa)
     
  0.978
POPTR_0006s15630.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-B9H8X1_POPTR] (502 aa)
     
  0.978
POPTR_0004s18130.1
Nucleosome/chromatin assembly factor group [source-UniProtKB/TrEMBL;Acc-B9H1A2_POPTR] (417 aa)
     
  0.978
POPTR_0003s03100.1
Nucleosome/chromatin assembly factor group [source-UniProtKB/TrEMBL;Acc-B9MWS4_POPTR] (465 aa)
     
  0.978
POPTR_0015s10040.1
Jumonji domain protein [source-UniProtKB/TrEMBL;Acc-B9IF38_POPTR] (1630 aa)
     
  0.977
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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