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POPTR_0004s22320.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s22320.1" - Homeodomain-containing family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s22320.1Homeodomain-containing family protein (325 aa)    
Predicted Functional Partners:
FL
Floricaula/leafy homolog; Probable transcription factor (377 aa)
           
  0.617
ERF2
Uncharacterized protein; AP2/ERF domain-containing transcription factor [source-UniProtKB/TrEMBL;Acc-B9NBR0_POPTR] (234 aa)
       
 
  0.591
ERF1
Uncharacterized protein; AP2/ERF domain-containing transcription factor [source-UniProtKB/TrEMBL;Acc-B9GK33_POPTR] (237 aa)
       
 
  0.591
KNOX
KNOX transcription factor; KNOX3 [source-UniProtKB/TrEMBL;Acc-A7XAJ1_POPTR] (260 aa)
     
 
  0.580
POPTR_0014s09640.1
DOF AFFECTING GERMINATION 2 family protein (261 aa)
           
  0.575
POPTR_0002s17490.1
DOF AFFECTING GERMINATION 2 family protein (231 aa)
           
  0.575
POPTR_0012s11820.1
Uncharacterized protein (313 aa)
           
  0.571
POPTR_0015s07140.1
Uncharacterized protein (561 aa)
           
  0.570
POPTR_0015s06980.1
Uncharacterized protein (377 aa)
       
 
  0.565
GRAS12
Uncharacterized protein; GRAS family transcription factor [source-UniProtKB/TrEMBL;Acc-B9MY72_POPTR]; Belongs to the GRAS family (441 aa)
       
 
  0.563
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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