STRINGSTRING
POPTR_0004s22800.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s22800.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s22800.1Predicted protein (586 aa)    
Predicted Functional Partners:
POPTR_0014s15740.1
Predicted protein (672 aa)
     
      0.677
POPTR_0004s24460.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PE43_POPTR] (712 aa)
     
   
  0.578
POPTR_0010s18470.1
Predicted protein (1071 aa)
     
   
  0.563
POPTR_0008s07920.1
Predicted protein (1071 aa)
     
   
  0.562
POPTR_0008s03470.1
Predicted protein (229 aa)
     
  0.550
POPTR_0004s22530.1
Uncharacterized protein (225 aa)
     
  0.550
POPTR_0009s11800.1
Predicted protein; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (886 aa)
     
   
  0.542
POPTR_0018s07170.1
Predicted protein (223 aa)
     
  0.532
POPTR_0011s15800.1
Predicted protein (212 aa)
     
  0.532
POPTR_0005s24870.1
Predicted protein (212 aa)
     
  0.532
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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