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STRINGSTRING
POPTR_0004s22900.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s22900.1" - annotation not available in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s22900.1annotation not available (244 aa)    
Predicted Functional Partners:
POPTR_0018s09190.1
Uncharacterized protein (1082 aa)
     
 
  0.675
POPTR_0014s03090.1
Uncharacterized protein (1073 aa)
     
 
  0.568
POPTR_0016s08190.1
annotation not available (673 aa)
     
 
  0.560
POPTR_0016s08180.1
annotation not available (183 aa)
     
 
  0.560
POPTR_0006s23130.1
Uncharacterized protein (901 aa)
     
 
  0.560
POPTR_0010s25960.1
Uncharacterized protein (551 aa)
           
  0.412
POPTR_0009s11130.1
annotation not available (1117 aa)
       
 
  0.410
POPTR_0016s01680.1
Transcription initiation factor IIF alpha subunit family protein (540 aa)
       
 
  0.404
POPTR_0006s01070.1
Transcription initiation factor IIF alpha subunit family protein (541 aa)
       
 
  0.404
POPTR_0005s25650.1
Uncharacterized protein (407 aa)
           
  0.400
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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