STRINGSTRING
POPTR_0004s23400.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s23400.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s23400.1Predicted protein (254 aa)    
Predicted Functional Partners:
POPTR_0003s19810.1
Uridine 5’-monophosphate synthase family protein (452 aa)
       
  0.605
POPTR_0001s06360.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHV8_POPTR] (475 aa)
       
  0.605
POPTR_0019s10190.1
Predicted protein (277 aa)
   
   
  0.554
POPTR_0013s10450.1
Predicted protein (263 aa)
   
   
  0.554
POPTR_0001s21240.1
Annotation not available (264 aa)
              0.499
POPTR_0018s11660.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PAY6_POPTR] (160 aa)
         
  0.480
POPTR_0016s14360.1
Predicted protein (231 aa)
         
  0.480
POPTR_0010s17020.1
Predicted protein (159 aa)
         
  0.480
POPTR_0008s09150.1
Predicted protein (159 aa)
         
  0.480
POPTR_0006s19870.1
Predicted protein (160 aa)
         
  0.480
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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