STRINGSTRING
POPTR_0004s24410.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s24410.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s24410.1Predicted protein (699 aa)    
Predicted Functional Partners:
POPTR_0016s13520.1
Predicted protein (949 aa)
     
  0.948
POPTR_0001s28380.1
Predicted protein (995 aa)
     
  0.945
POPTR_0017s11250.1
Predicted protein (695 aa)
     
  0.899
POPTR_0017s11240.1
Predicted protein (699 aa)
     
  0.894
POPTR_0017s11270.1
Uncharacterized protein (618 aa)
     
  0.891
POPTR_0017s11260.1
Uncharacterized protein (80 aa)
     
  0.891
POPTR_0015s10570.1
Predicted protein (890 aa)
     
  0.891
POPTR_0012s09780.1
Predicted protein (916 aa)
     
  0.891
POPTR_0025s00450.1
Predicted protein (1237 aa)
     
 
  0.784
POPTR_0004s04320.1
Predicted protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1215 aa)
     
 
  0.701
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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