STRINGSTRING
POPTR_0005s00240.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s00240.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s00240.1Predicted protein (775 aa)    
Predicted Functional Partners:
POPTR_0017s12520.1
Predicted protein (225 aa)
     
 
  0.993
POPTR_0004s12080.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PAA4_POPTR]; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (604 aa)
     
 
  0.993
POPTR_0010s06120.1
Uncharacterized protein (190 aa)
     
        0.987
POPTR_0008s18330.1
Predicted protein (791 aa)
     
        0.987
POPTR_0015s05960.1
Predicted protein (1177 aa)
   
  0.978
POPTR_0012s01120.1
Predicted protein (1207 aa)
   
  0.978
POPTR_0010s20970.1
Predicted protein (232 aa)
     
 
  0.959
POPTR_0009s12100.1
Predicted protein; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (840 aa)
     
 
  0.956
POPTR_0015s10010.1
Predicted protein (314 aa)
     
 
  0.936
POPTR_0005s09970.1
Predicted protein (763 aa)
     
      0.929
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (17%) [HD]