STRINGSTRING
POPTR_0005s00520.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s00520.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s00520.1Predicted protein (506 aa)    
Predicted Functional Partners:
POPTR_0005s16540.1
Predicted protein (2268 aa)
     
  0.980
POPTR_0002s09330.1
Predicted protein (2276 aa)
     
  0.980
POPTR_0003s04120.1
Predicted protein (546 aa)
   
  0.844
POPTR_0003s18200.1
Predicted protein (359 aa)
   
  0.842
POPTR_0016s03060.1
Predicted protein (661 aa)
   
0.839
POPTR_0005s27510.1
Predicted protein (389 aa)
   
  0.836
POPTR_0001s47730.1
Predicted protein (509 aa)
   
  0.835
POPTR_0013s01300.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8Y1_POPTR] (436 aa)
   
  0.832
POPTR_0006s28090.1
Predicted protein (358 aa)
   
  0.832
POPTR_0012s01680.1
Predicted protein (355 aa)
   
  0.831
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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