STRINGSTRING
POPTR_0005s01300.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s01300.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s01300.1Predicted protein (309 aa)    
Predicted Functional Partners:
POPTR_0007s14680.1
Predicted protein (268 aa)
   
          0.511
POPTR_0006s01530.1
Hypothetical protein (205 aa)
   
          0.511
POPTR_0019s02730.1
Uncharacterized protein (163 aa)
   
          0.505
POPTR_0006s09990.1
Uncharacterized protein (338 aa)
   
          0.503
POPTR_1420s00200.1
Uncharacterized protein (154 aa)
   
          0.501
POPTR_0012s00840.1
Predicted protein (110 aa)
   
          0.500
POPTR_0011s06380.1
Uncharacterized protein (175 aa)
   
          0.498
POPTR_0016s09590.1
Uncharacterized protein (124 aa)
   
          0.496
POPTR_0039s00310.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002318457.1] (189 aa)
   
          0.493
POPTR_0001s13320.1
Hypothetical protein (129 aa)
   
          0.488
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (13%) [HD]