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STRINGSTRING
POPTR_0005s01580.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s01580.1" - Pectinesterase in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s01580.1Pectinesterase (324 aa)    
Predicted Functional Partners:
POPTR_0006s07660.1
Uncharacterized protein (779 aa)
           
  0.635
POPTR_0001s17180.1
Uncharacterized protein; Belongs to the glycosyl hydrolase 28 family (447 aa)
         
  0.614
POPTR_0018s14070.1
Uncharacterized protein (392 aa)
           
  0.590
POPTR_0006s07620.2
Uncharacterized protein (392 aa)
           
  0.590
POPTR_0006s08530.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGL7_POPTR] (124 aa)
           
  0.537
POPTR_0018s11910.1
Uncharacterized protein; Belongs to the calycin superfamily. Lipocalin family (185 aa)
           
  0.465
POPTR_0015s13370.1
Flowering locus T like family protein (173 aa)
           
  0.465
POPTR_1101s00200.1
annotation not available (505 aa)
           
  0.459
POPTR_0516s00220.1
annotation not available (220 aa)
           
  0.459
POPTR_0151s00200.1
Uncharacterized protein (827 aa)
           
  0.459
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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