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POPTR_0005s01720.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s01720.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s01720.1Uncharacterized protein (317 aa)    
Predicted Functional Partners:
POPTR_0016s12960.1
Gamma interferon responsive lysosomal thiol reductase family protein (242 aa)
           
  0.741
NTH1
Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines (362 aa)
     
   
  0.683
POPTR_0004s06070.1
Ovate family protein (431 aa)
       
 
  0.672
POPTR_0015s13130.1
annotation not available (356 aa)
           
  0.598
POPTR_0012s13180.1
Stress-responsive family protein (580 aa)
           
  0.598
POPTR_0015s14700.1
Ripening-related family protein (203 aa)
           
  0.579
POPTR_0015s14690.1
Ripening-related family protein (195 aa)
           
  0.579
POPTR_0015s14680.1
Ripening-related family protein (197 aa)
           
  0.579
POPTR_0014s04460.1
Uncharacterized protein (298 aa)
       
 
  0.547
POPTR_0002s13720.1
HD-ZIP family protein (295 aa)
       
 
  0.547
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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