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POPTR_0005s02060.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s02060.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s02060.1Uncharacterized protein (337 aa)    
Predicted Functional Partners:
POPTR_0005s25260.2
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly (360 aa)
     
      0.879
POPTR_0011s04430.1
Endonuclease family protein (302 aa)
           
  0.870
POPTR_0015s10010.1
Brix domain-containing family protein (314 aa)
     
      0.861
POPTR_0001s08790.1
Uncharacterized protein (247 aa)
     
        0.851
POPTR_0015s14370.1
rRNA processing protein EBP2 (300 aa)
     
        0.842
POPTR_0010s18970.1
Ca(2+)-dependent nuclease family protein (335 aa)
   
   
  0.825
POPTR_0008s07470.1
annotation not available (190 aa)
   
   
  0.825
POPTR_0005s19520.1
Leucine zipper factor-related family protein (318 aa)
     
        0.794
POPTR_0019s11490.1
Uncharacterized protein (414 aa)
     
      0.793
POPTR_0009s04560.1
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
 
  0.786
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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