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POPTR_0005s02180.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s02180.1" - Phosphatase 2C family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s02180.1Phosphatase 2C family protein (368 aa)    
Predicted Functional Partners:
POPTR_0002s19020.1
Transducin family protein (1455 aa)
           
  0.729
POPTR_0005s00710.4
Glycogen synthase kinase-3 MsK-1 family protein; Belongs to the protein kinase superfamily (409 aa)
     
 
  0.675
POPTR_0013s01620.1
Serine/threonine-protein phosphatase (321 aa)
     
 
  0.664
POPTR_0013s02360.1
Mitogen-activated protein kinase kinase kinase 1 (670 aa)
     
 
  0.663
POPTR_0005s03640.1
Mitogen-activated protein kinase kinase kinase 1 (663 aa)
     
 
  0.663
POPTR_0005s02390.1
Serine/threonine-protein phosphatase (321 aa)
       
 
  0.656
POPTR_0016s03690.1
Glycine-rich family protein (691 aa)
           
  0.641
POPTR_0006s03580.1
Glycine-rich family protein (124 aa)
           
  0.641
POPTR_0016s14340.1
Uncharacterized protein (564 aa)
     
 
  0.638
POPTR_0006s10870.1
Uncharacterized protein (550 aa)
     
 
  0.638
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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