STRINGSTRING
POPTR_0005s02540.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s02540.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s02540.1Predicted protein; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments (303 aa)    
Predicted Functional Partners:
POPTR_0005s22130.1
Predicted protein (258 aa)
     
  0.993
POPTR_0001s33420.1
Predicted protein (389 aa)
     
      0.947
POPTR_0010s07750.1
Predicted protein (370 aa)
     
      0.941
POPTR_0008s17070.1
Predicted protein (349 aa)
     
      0.941
POPTR_0003s15630.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI82_POPTR] (324 aa)
     
      0.941
POPTR_0001s12450.1
Predicted protein (324 aa)
     
      0.941
POPTR_0014s16120.1
Predicted protein (679 aa)
     
 
  0.924
POPTR_0011s08690.1
Fimbrin-like family protein (608 aa)
     
 
  0.924
POPTR_0002s25290.1
Predicted protein (660 aa)
     
 
  0.924
POPTR_0001s37110.1
Predicted protein (691 aa)
     
 
  0.924
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (13%) [HD]