STRINGSTRING
POPTR_0005s02690.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s02690.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s02690.1Predicted protein (1021 aa)    
Predicted Functional Partners:
POPTR_0274s00200.1
Uncharacterized protein (392 aa)
         
    0.900
POPTR_0018s11040.1
S-adenosylmethionine decarboxylase proenzyme (396 aa)
         
    0.900
POPTR_0018s06960.1
1-aminocyclopropane-1-carboxylate [source-UniProtKB/TrEMBL;Acc-B9N5G2_POPTR] (446 aa)
         
    0.900
POPTR_0017s14280.1
S-adenosylmethionine decarboxylase proenzyme [source-UniProtKB/TrEMBL;Acc-A9PHD3_POPTR] (361 aa)
         
    0.900
POPTR_0017s08610.1
Adenosylhomocysteinase/s-adenosyl-l-homocysteine hydrolase (485 aa)
         
    0.900
METK1
S-adenosylmethionine synthase 1 [source-UniProtKB/Swiss-Prot;Acc-METK1_POPTR]; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (By similarity) (392 aa)
         
    0.900
POPTR_0014s01300.1
1-aminocyclopropane-1-carboxylate [source-UniProtKB/TrEMBL;Acc-B9IBN3_POPTR] (468 aa)
         
    0.900
METK2
S-adenosylmethionine synthase 2 [source-UniProtKB/Swiss-Prot;Acc-METK2_POPTR]; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (By similarity) (393 aa)
         
    0.900
POPTR_0010s16330.1
S-adenosylmethionine synthetase 3 [source-UniProtKB/TrEMBL;Acc-B9HXH1_POPTR]; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (395 aa)
         
    0.900
POPTR_0010s14390.1
S-adenosylmethionine decarboxylase proenzyme (355 aa)
         
    0.900
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (11%) [HD]