STRINGSTRING
POPTR_0005s02780.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s02780.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s02780.1Predicted protein (334 aa)    
Predicted Functional Partners:
POPTR_0018s11220.1
Predicted protein (204 aa)
     
  0.991
POPTR_0012s04790.1
Predicted protein (398 aa)
     
  0.990
POPTR_0006s19460.1
Predicted protein (107 aa)
     
  0.990
POPTR_0014s07510.1
Putative uncharacterized protein CDKD [source-UniProtKB/TrEMBL;Acc-B9IC95_POPTR] (398 aa)
     
  0.990
POPTR_0006s19470.1
Annotation not available (95 aa)
     
  0.990
POPTR_0002s05500.1
Predicted protein (758 aa)
     
  0.990
POPTR_0001s32340.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002338310.1] (119 aa)
     
  0.984
POPTR_0001s09040.1
Predicted protein; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase (284 aa)
     
  0.984
POPTR_0015s03060.1
Predicted protein (309 aa)
     
  0.964
POPTR_0015s03050.1
Annotation not available (148 aa)
     
  0.964
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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