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POPTR_0005s03750.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s03750.1" - Mevalonate kinase family protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s03750.1Mevalonate kinase family protein (376 aa)    
Predicted Functional Partners:
POPTR_0003s09680.1
Predicted protein (504 aa)
   
 
  0.979
POPTR_0001s01790.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHN6_POPTR] (507 aa)
   
 
  0.979
POPTR_0011s14810.1
Predicted protein (588 aa)
       
  0.977
POPTR_0005s27830.1
Predicted protein (563 aa)
       
  0.977
POPTR_0002s00570.1
Predicted protein (588 aa)
       
  0.977
POPTR_0001s46120.1
Predicted protein (577 aa)
       
  0.977
POPTR_0009s17090.1
Predicted protein (589 aa)
       
  0.977
POPTR_0004s21830.1
Predicted protein (594 aa)
       
  0.977
POPTR_0010s24440.1
Predicted protein (416 aa)
   
 
  0.900
POPTR_0008s02200.1
Predicted protein (416 aa)
   
 
  0.900
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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