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POPTR_0005s04640.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s04640.1" - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-2 in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s04640.1VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-2 (240 aa)    
Predicted Functional Partners:
POPTR_0016s08960.1
Syntaxin 73 family protein; Belongs to the syntaxin family (260 aa)
     
 
  0.705
POPTR_0006s13150.1
Syntaxin 73 family protein; Belongs to the syntaxin family (261 aa)
     
 
  0.697
POPTR_0018s14040.1
Uncharacterized protein; Belongs to the OSBP family (336 aa)
       
 
  0.690
POPTR_0006s07600.1
Uncharacterized protein; Belongs to the OSBP family (384 aa)
       
 
  0.690
POPTR_0006s08670.1
annotation not available (234 aa)
       
 
  0.639
POPTR_0006s08660.1
Uncharacterized protein; Belongs to the OSBP family (352 aa)
       
 
  0.639
POPTR_0010s20150.1
Syntaxin 81 family protein (311 aa)
           
  0.601
POPTR_0008s06360.1
Syntaxin 81 family protein (301 aa)
           
  0.601
POPTR_0016s12770.1
Uncharacterized protein (735 aa)
     
   
  0.585
POPTR_0004s15970.1
annotation not available (452 aa)
     
 
  0.564
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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