Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Groups of genes that are frequently observed in each other's genomic neighborhood.
Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Uncharacterized protein (88 aa)
Predicted Functional Partners:
Predicted protein (176 aa)
Uncharacterized protein (221 aa)
Hypothetical protein (148 aa)
Predicted protein (234 aa)
Predicted protein (272 aa)
Uncharacterized protein (220 aa)
Predicted protein (428 aa)
Hypothetical protein (210 aa)
Uncharacterized protein (501 aa)
Predicted protein (476 aa)
Your Current Organism:
NCBI taxonomy Id: 3694 Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family