STRINGSTRING
POPTR_0005s04940.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s04940.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s04940.1Predicted protein (213 aa)    
Predicted Functional Partners:
POPTR_0034s00260.1
Predicted protein; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
        0.987
POPTR_0010s02520.1
Predicted protein; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
        0.987
POPTR_0019s08500.1
Predicted protein (132 aa)
     
      0.920
POPTR_0013s09160.1
Predicted protein (131 aa)
     
      0.920
POPTR_0010s24120.1
Predicted protein (266 aa)
     
      0.872
POPTR_0005s25260.1
Predicted protein (360 aa)
     
        0.860
POPTR_0011s15980.1
Predicted protein (229 aa)
     
        0.859
POPTR_0001s46440.1
Predicted protein (229 aa)
     
        0.859
POPTR_0015s10010.1
Predicted protein (314 aa)
     
        0.856
POPTR_0015s14370.1
Predicted protein (300 aa)
     
        0.855
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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