STRINGSTRING
POPTR_0005s05370.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s05370.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s05370.1Predicted protein (176 aa)    
Predicted Functional Partners:
POPTR_0006s04760.1
Predicted protein (510 aa)
       
  0.899
POPTR_0001s23270.1
Predicted protein (132 aa)
       
 
  0.728
POPTR_0014s03240.1
Predicted protein (312 aa)
     
      0.713
POPTR_0002s12940.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHG3_POPTR] (312 aa)
     
      0.713
POPTR_0001s17290.1
Predicted protein (434 aa)
     
      0.713
POPTR_0014s07420.1
Predicted protein; Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2- thiolation reaction by being thiocarboxylated (-COSH) at its C- terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target proteins. The thiocarboxylated form serves as substrate for conjugation and oxidative stress specifically induces [...] (99 aa)
       
      0.705
POPTR_0016s07280.1
2-cys peroxiredoxinPutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PEL1_POPTR] (269 aa)
       
  0.668
POPTR_0006s22130.1
2-cys peroxiredoxinPutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PAB9_POPTR] (263 aa)
       
  0.668
POPTR_0015s10280.1
Predicted protein (324 aa)
     
      0.656
POPTR_0012s09510.1
Predicted protein (311 aa)
     
      0.656
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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