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POPTR_0005s06870.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s06870.1" - HISTIDINOL DEHYDROGENASE family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s06870.1HISTIDINOL DEHYDROGENASE family protein; Belongs to the SNF7 family (222 aa)    
Predicted Functional Partners:
POPTR_0001s01810.1
Uncharacterized protein (179 aa)
     
 
  0.983
POPTR_0001s44880.1
Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs (250 aa)
     
 
  0.962
POPTR_0011s14060.1
Uncharacterized protein (107 aa)
     
 
  0.952
POPTR_0010s25270.1
Uncharacterized protein (446 aa)
     
 
  0.951
POPTR_0001s20980.1
Uncharacterized protein (115 aa)
     
 
  0.951
POPTR_0008s01300.1
annotation not available (123 aa)
     
 
  0.938
POPTR_0008s03470.1
SNF7 family protein; Belongs to the SNF7 family (229 aa)
     
 
  0.921
POPTR_0004s22530.1
annotation not available (225 aa)
     
 
  0.921
POPTR_0475s00210.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002334278.1]; Belongs to the AAA ATPase family (383 aa)
     
 
  0.919
POPTR_0010s24370.1
Uncharacterized protein; Belongs to the AAA ATPase family (431 aa)
     
 
  0.919
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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