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STRINGSTRING
POPTR_0005s07110.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s07110.1" - annotation not available in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s07110.1annotation not available (307 aa)    
Predicted Functional Partners:
POPTR_0010s11660.1
Uncharacterized protein (327 aa)
     
   
  0.608
POPTR_0008s13440.1
Zinc finger family protein (351 aa)
     
   
  0.608
POPTR_0018s09190.1
Uncharacterized protein (1082 aa)
     
        0.602
POPTR_0017s11800.1
Uncharacterized protein (306 aa)
           
  0.598
POPTR_0004s21890.1
Uncharacterized protein (594 aa)
           
  0.598
POPTR_0007s09470.1
Phosphatase 2C family protein (384 aa)
     
   
  0.595
POPTR_0005s10550.1
Uncharacterized protein (381 aa)
     
   
  0.595
POPTR_0010s24140.1
Uncharacterized protein (469 aa)
           
  0.586
POPTR_0008s02580.1
Uncharacterized protein (571 aa)
           
  0.586
POPTR_0003s19840.1
Uncharacterized protein (344 aa)
           
  0.586
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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