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POPTR_0005s07260.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s07260.1" - Uncharacterized protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s07260.1Uncharacterized protein (200 aa)    
Predicted Functional Partners:
POPTR_0017s00360.1
Predicted protein; Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin (221 aa)
   
 
  0.912
POPTR_0007s00330.1
Predicted protein; Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin (219 aa)
   
 
  0.912
POPTR_0014s07870.1
Predicted protein (199 aa)
   
  0.870
POPTR_0002s16020.1
Predicted protein (431 aa)
   
  0.870
POPTR_0019s08120.1
Predicted protein (592 aa)
   
  0.859
POPTR_0003s19810.1
Uridine 5’-monophosphate synthase family protein (452 aa)
         
  0.730
POPTR_0001s06360.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHV8_POPTR] (475 aa)
         
  0.730
POPTR_0019s13180.1
Predicted protein (264 aa)
   
 
  0.717
POPTR_0013s13530.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PD51_POPTR] (274 aa)
   
 
  0.717
POPTR_0007s04980.1
Hypothetical protein (277 aa)
     
 
  0.663
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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