STRINGSTRING
POPTR_0005s07300.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s07300.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s07300.1Predicted protein (169 aa)    
Predicted Functional Partners:
POPTR_0005s21280.1
Predicted protein (478 aa)
           
  0.593
POPTR_0002s07050.1
Predicted protein (463 aa)
           
  0.593
POPTR_0009s08850.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P849_POPTR]; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (451 aa)
           
  0.503
POPTR_0002s11250.1
Tubulin alpha-1 chain [source-UniProtKB/TrEMBL;Acc-A9PHZ8_POPTR]; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (451 aa)
           
  0.503
POPTR_0001s29670.1
Tubulin alpha-3 chain [source-UniProtKB/TrEMBL;Acc-A9P817_POPTR]; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (451 aa)
           
  0.503
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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