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POPTR_0005s07840.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s07840.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s07840.1Uncharacterized protein (127 aa)    
Predicted Functional Partners:
POPTR_0011s16950.1
Predicted protein (461 aa)
   
 
  0.811
POPTR_0001s47370.1
Predicted protein (379 aa)
   
 
  0.811
POPTR_0012s04250.1
Predicted protein (344 aa)
   
   
  0.719
POPTR_0002s22440.1
Predicted protein (446 aa)
   
   
  0.712
POPTR_0001s11910.1
Hypothetical protein (215 aa)
   
 
  0.654
POPTR_0003s00500.1
Predicted protein (90 aa)
         
  0.624
POPTR_0958s00200.1
Urishiol oxidase ; Lignin degradation and detoxification of lignin-derived products (559 aa)
         
  0.623
POPTR_0091s00270.1
Uncharacterized protein (553 aa)
         
  0.623
POPTR_0019s14530.1
Predicted protein; Lignin degradation and detoxification of lignin-derived products (576 aa)
         
  0.623
POPTR_0019s11860.1
Multicopper oxidase; Lignin degradation and detoxification of lignin-derived products (552 aa)
         
  0.623
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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