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STRINGSTRING
POPTR_0005s07840.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s07840.1" - annotation not available in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s07840.1annotation not available (127 aa)    
Predicted Functional Partners:
POPTR_0001s11910.1
Cytochrome c oxidase assembly protein CtaG / Cox11 family (215 aa)
 
 
  0.898
POPTR_0003s11300.1
Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A- site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (782 aa)
     
   
  0.840
POPTR_0012s04250.1
SURF1-like protein; Probably involved in the biogenesis of the COX complex (344 aa)
   
   
  0.822
POPTR_0011s16950.1
Uncharacterized protein (461 aa)
   
 
  0.819
POPTR_0001s47370.1
Uncharacterized protein (379 aa)
   
 
  0.819
POPTR_0002s22440.1
Uncharacterized protein (446 aa)
   
   
  0.808
POPTR_0003s00500.1
Uncharacterized protein (90 aa)
   
   
  0.802
POPTR_0019s15130.1
annotation not available (375 aa)
 
   
  0.772
POPTR_0011s11970.1
Cytochrome c oxidase copper chaperone-related family protein (75 aa)
     
 
  0.765
POPTR_0001s41070.1
Cytochrome c oxidase copper chaperone-related family protein (75 aa)
     
 
  0.765
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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