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POPTR_0005s07970.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s07970.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s07970.1Uncharacterized protein (460 aa)    
Predicted Functional Partners:
POPTR_0002s02910.1
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family (915 aa)
           
  0.763
POPTR_0010s23370.1
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family (1067 aa)
           
  0.740
POPTR_0008s03530.1
annotation not available (415 aa)
           
  0.740
POPTR_0009s12740.1
annotation not available (975 aa)
           
  0.681
POPTR_0007s13860.3
annotation not available (998 aa)
           
  0.681
POPTR_0005s11880.1
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family (910 aa)
           
  0.681
POPTR_0004s16970.1
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family (842 aa)
           
  0.681
POPTR_0010s15010.1
Uncharacterized protein (236 aa)
           
  0.676
POPTR_0008s10840.1
Universal stress family protein (237 aa)
           
  0.676
POPTR_0010s21600.1
GTP-binding family protein; Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002315205.1] (191 aa)
     
 
  0.668
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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