• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0005s08150.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s08150.1" - Peptidylprolyl isomerase in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s08150.1Peptidylprolyl isomerase (185 aa)    
Predicted Functional Partners:
POPTR_0010s08930.1
Uncharacterized protein (213 aa)
     
   
  0.977
POPTR_0001s03600.1
Uncharacterized protein (465 aa)
     
   
  0.952
POPTR_0010s17400.1
Oxygen evolving enhancer 3 family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHE0_POPTR] (202 aa)
     
   
  0.947
POPTR_0010s12050.1
Inorganic carbon transport family protein (187 aa)
     
   
  0.946
Lhca6
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated (261 aa)
     
   
  0.939
POPTR_0010s21710.1
Photosystem 2 reaction center PsbP family protein (235 aa)
     
   
  0.930
POPTR_0003s17500.1
annotation not available (130 aa)
     
   
  0.929
POPTR_0003s08900.1
Uncharacterized protein (191 aa)
     
   
  0.929
POPTR_0008s05030.1
annotation not available (167 aa)
     
   
  0.926
POPTR_0006s22650.1
Uncharacterized protein (198 aa)
     
        0.881
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (6%) [HD]