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POPTR_0005s08260.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0005s08260.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0005s08260.1Uncharacterized protein (529 aa)    
Predicted Functional Partners:
POPTR_0003s03220.1
Glycine-rich family protein (532 aa)
       
 
  0.925
POPTR_0005s10940.1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1737 aa)
     
 
  0.787
POPTR_1437s00210.1
annotation not available (283 aa)
       
 
  0.783
NRPD903
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1920 aa)
       
 
  0.783
POPTR_0001s08650.1
Uncharacterized protein; Nuclear RNA polymerase D1A (1109 aa)
       
 
  0.783
NRPD902
DNA-directed RNA polymerase alpha subunit family protein; RNA polymerase IV subunit [source-UniProtKB/TrEMBL;Acc-B9GM06_POPTR] (842 aa)
       
 
  0.783
POPTR_0015s01330.1
Uncharacterized protein (696 aa)
     
 
  0.764
POPTR_0018s02540.1
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1181 aa)
     
 
  0.727
POPTR_0018s02530.1
DNA-directed RNA polymerase family protein (152 aa)
     
 
  0.727
POPTR_0006s27980.1
DNA-directed RNA polymerase family protein (260 aa)
     
 
  0.727
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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